getedgesbynodeid (biograph)

Get handles to edges in biograph object

Syntax

Edges = getedgesbynodeid(BGobj,SourceIDs,SinkIDs)

Arguments

BGobj

Biograph object.

SourceIDs, SinkIDs

Enter a character vector, cell array of character vectors, or an empty cell array (gets all edges).

Description

Edges = getedgesbynodeid(BGobj,SourceIDs,SinkIDs) gets the handles to the edges that connect the specified source nodes (SourceIDs) to the specified sink nodes (SinkIDs) in a biograph object.

Examples

  1. Create a biograph object for the Hominidae family.

    species = {'Homo','Pan','Gorilla','Pongo','Baboon',...
           'Macaca','Gibbon'};
cm = magic(7)>25 & 1-eye(7);
bg = biograph(cm, species);

  2. Find all the edges that connect to the Homo node.

    EdgesIn = getedgesbynodeid(bg,[],'Homo');
EdgesOut = getedgesbynodeid(bg,'Homo',[]);
set(EdgesIn,'LineColor',[0 1 0]);
set(EdgesOut,'LineColor',[1 0 0]);
bg.view;

  3. Find all edges that connect members of the Cercopithecidae family to members of the Hominidae family.

    Cercopithecidae = {'Macaca','Baboon'};
Hominidae = {'Homo','Pan','Gorilla','Pongo'};
edgesSel = getedgesbynodeid(bg,Cercopithecidae,Hominidae);
set(bg.edges,'LineColor',[.5 .5 .5]);
set(edgesSel,'LineColor',[0 0 1]);
bg.view;

See Also

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Topics

Introduced before R2006a

Bioinformatics Toolbox Documentation

Support