partition

Partition a datastore

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Syntax

subds = partition(ds,n,index)
subds = partition(ds,'Files',index)
subds = partition(ds,'Files',filename)

Description

example

subds = partition(ds,n,index) partitions datastore ds into the number of parts specified by n and returns the partition corresponding to the index index.

example

subds = partition(ds,'Files',index) partitions the datastore by files and returns the partition corresponding to the file of index index in the Files property.

subds = partition(ds,'Files',filename) partitions the datastore by files and returns the partition corresponding to the file specified by filename.

Examples

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Open Live Script

Create a datastore for a large collection of files. For this example, use ten copies of the sample file airlinesmall.csv. To handle missing fields in the tabular data, specify the name-value pairs TreatAsMissing and MissingValue.

files = repmat({'airlinesmall.csv'},1,10);
ds = tabularTextDatastore(files,...
                 'TreatAsMissing','NA','MissingValue',0);

Partition the datastore into three parts and return the first partition. The partition function returns approximately the first third of the data from the datastore ds.

subds = partition(ds,3,1)
subds = 
  TabularTextDatastore with properties:

                      Files: {
                             ' ...\matlab\toolbox\matlab\demos\airlinesmall.csv';
                             ' ...\matlab\toolbox\matlab\demos\airlinesmall.csv';
                             ' ...\matlab\toolbox\matlab\demos\airlinesmall.csv'
                              ... and 1 more
                             }
               FileEncoding: 'UTF-8'
   AlternateFileSystemRoots: {}
          ReadVariableNames: true
              VariableNames: {'Year', 'Month', 'DayofMonth' ... and 26 more}

  Text Format Properties:
             NumHeaderLines: 0
                  Delimiter: ','
               RowDelimiter: '\r\n'
             TreatAsMissing: 'NA'
               MissingValue: 0

  Advanced Text Format Properties:
            TextscanFormats: {'%f', '%f', '%f' ... and 26 more}
                   TextType: 'char'
         ExponentCharacters: 'eEdD'
               CommentStyle: ''
                 Whitespace: ' \b\t'
    MultipleDelimitersAsOne: false

  Properties that control the table returned by preview, read, readall:
      SelectedVariableNames: {'Year', 'Month', 'DayofMonth' ... and 26 more}
            SelectedFormats: {'%f', '%f', '%f' ... and 26 more}
                   ReadSize: 20000 rows

The Files property of the datastore contains a list of files included in the datastore. Check the number of files in the Files property of the datastore ds and the partitioned datastore subds. The datastore ds contains ten files and the partition subds contains the first four files.

length(ds.Files)
ans = 10

length(subds.Files)
ans = 4
Open Live Script

Create a datastore from the sample file, mapredout.mat, which is the output file of the mapreduce function. 

ds = datastore('mapredout.mat');

Get the default number of partitions for ds. 

n = numpartitions(ds);

Partition the datastore into the default number of partitions and return the datastore corresponding to the first partition. 

subds = partition(ds,n,1);

Read the data in subds. 

while hasdata(subds)
	data = read(subds);
end
Open Script

Create a datastore that contains three image files.

ds = imageDatastore({'street1.jpg','peppers.png','corn.tif'})

ds = 

  ImageDatastore with properties:

       Files: {
              ' ...\matlab\toolbox\matlab\demos\street1.jpg';
              ' ...\matlab\toolbox\matlab\imagesci\peppers.png';
              ' ...\matlab\toolbox\matlab\imagesci\corn.tif'
              }
    ReadSize: 1
      Labels: {}
     ReadFcn: @readDatastoreImage

Partition the datastore by files and return the part corresponding to the second file.

subds = partition(ds,'Files',2)

subds = 

  ImageDatastore with properties:

       Files: {
              ' ...\matlab\toolbox\matlab\imagesci\peppers.png'
              }
    ReadSize: 1
      Labels: {}
     ReadFcn: @readDatastoreImage

subds contains one file.

Create a datastore from the sample file, mapredout.mat, which is the output file of the mapreduce function.

ds = datastore('mapredout.mat');

Partition the datastore into three parts on three workers in a parallel pool.

numWorkers = 3;
p = parpool('local',numWorkers);
n = numpartitions(ds,p);

parfor ii=1:n
    subds = partition(ds,n,ii);
    while hasdata(subds)
        data = read(subds);
    end
end

Input Arguments

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Input datastore. You can use the datastore function to create a datastore object from your data.

Number of partitions, specified as a positive integer.

If you specify a number of partitions that is not a numerical factor of the number of files in the datastore, partition will place each of the remaining observations in the existing partitions, starting with the first partition.

The number of existing partitions that contain an additional observation is equal to the remainder obtained when dividing the number of files in the datastore by the number of partitions. For example, if your datastore object contains 23 files that you wish to partition into 3 parts, the first two partitions that partition creates will contain 8 files, and the last partition will contain 7 files.

Example: 3

Data Types: double

Index, specified as a positive integer.

Example: 1

Data Types: double

File name, specified as a character vector or string scalar.

The value of filename must match exactly the file name contained in the Files property of the datastore. To ensure that the file names match exactly, specify filename using ds.Files{N} where N is the index of the file in the Files property. For example, ds.Files{3} specifies the third file in the datastore ds.

Example: ds.Files{3}

Example: 'file1.csv'

Example: '../dir/data/file1.csv'

Example: 'hdfs://myserver:7867/data/file1.txt'

Data Types: char

Output Arguments

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Output datastore. The output datastore is of the same type as the input datastore ds.

See Also

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Introduced in R2015a

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