Class: GTFAnnotation
Retrieve range of annotations from GTFAnnotation object
Range = getRange(AnnotObj)
Range = getRange(AnnotObj)Range,
a 1-by-2 numeric array specifying the minimum and maximum positions
in the reference sequence covered by annotations in AnnotObj.
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Object of the |
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1-by-2 numeric array specifying the minimum and maximum positions
in the reference sequence covered by annotations in |
Construct a GTFAnnotation object from a
GTF-formatted file that is provided with Bioinformatics Toolbox™,
and then return the range of the feature annotations:
% Construct a GTFAnnotation object from a GTF file
GTFAnnotObj = GTFAnnotation('hum37_2_1M.gtf');
% Return first and last positions of reference associated with feature annotations
range = getRange(GTFAnnotObj)
range =
41609 1371382Use the getSubset method with the Reference name-value
pair to return a GFFAnnotation object containing
only one reference sequence. Then use this subsetted object as input
to the getRange method.
getData (GTFAnnotation) | getFeatureNames (GTFAnnotation) | getGeneNames (GTFAnnotation) | getGenes (GTFAnnotation) | getIndex (GTFAnnotation) | getRange (GTFAnnotation) | getReferenceNames (GTFAnnotation) | getSegments (GTFAnnotation) | getSubset (GTFAnnotation) | getTranscripts (GTFAnnotation) | GFFAnnotation | GTFAnnotation