Add product species object to reaction object
speciesObj =
addproduct(reactionObj, 'NameValue')
speciesObj =
addproduct(reactionObj, speciesObj)
speciesObj =
addproduct(reactionObj, 'NameValue', Stoichcoefficient)
speciesObj =
addproduct(reactionObj, speciesObj, Stoichcoefficient)
| Reaction object. Enter a name for the reaction object. |
| Names of species objects. Enter a character vector or cell array of character vectors. A species object can be referenced by
other objects using its name. You can use the function
|
| Species object or vector of species objects. |
| Stoichiometric coefficients for products. Enter a positive scalar or vector of positive
doubles. If vector, it must have the same number of elements as
the number of species specified by
|
speciesObj =
addproduct(reactionObj, 'NameValue')speciesObj). In the species object, this
method assigns the value (NameValueName. In the reaction object, this method assigns the
species object to the property Products, modifies the reaction
equation in the property Reaction to include the new species, and
adds the stoichiometric coefficient 1 to the property
Stoichiometry.
When you define a reaction with a new species:
If no compartment objects exist in the model, the
method creates a compartment object (called ')
in the model and adds the newly created species to that compartment.unnamed'
If only one compartment object (compObj)
exists in the model, the method creates a species object in that compartment.
If there is more than one compartment object (compObj)
in the model, you must qualify the species name with the compartment
name.
For example, cell.glucose denotes that you
want to put the species named glucose into a compartment
named cell. Additionally, if the compartment named cell does
not exist, the process of adding the reaction creates the compartment
and names it cell.
Create and add a species object to a compartment object with
the method addspecies.
speciesObj =
addproduct(reactionObj, speciesObj)speciesObjreactionObjParent. In the reaction object
(reactionObj), it assigns the species object to
the property Products, modifies the reaction equation
in the property Reaction to include the new species,
and adds the stoichiometric coefficient 1 to the
property Stoichiometry.
speciesObj =
addproduct(reactionObj, 'NameValue', Stoichcoefficient)Stoichcoefficient) to the property Stoichiometry.
If NameValue is a cell array of species names,
then Stoichcoefficient must be a vector of doubles
with the same length as NameValue.
speciesObj =
addproduct(reactionObj, speciesObj, Stoichcoefficient)Stoichcoefficient) to the property Stoichiometry.
Species names are referenced by reaction objects, kinetic law
objects, and model objects. If you change the Name of
a species the reaction also uses the new name. You must however configure
all other applicable elements such as rules that use the species,
and the kinetic law object.
Create a model object, and then add a reaction object.
modelObj = sbiomodel('my_model'); reactionObj = addreaction(modelObj, 'A + C -> U');
Modify the reaction of the reactionObj from A
+ C -> U to A + C -> U + 2 H.
speciesObj = addproduct(reactionObj, 'H', 2);