Class: geneont
Convert geneont object into relationship matrix
[Matrix, ID, Relationship]
= getmatrix(GeneontObj)
[ converts
a geneont object, Matrix, ID, Relationship]
= getmatrix(GeneontObj)GeneontObj, into Matrix,
a matrix of relationship values between nodes (row and column indices),
in which 0 indicates no relationship, 1 indicates
an “is_a” relationship, and 2 indicates
a “part_of” relationship. ID is
a column vector listing Gene Ontology IDs that correspond to the rows
and columns of Matrix. Relationship is
a cell array of character vectors defining the types of relationships.
GeneontObj | A geneont object, such as created by the geneont constructor function. |
Matrix | Matrix of relationship values between nodes (row and column
indices), in which 0 indicates no relationship, 1 indicates
an “is_a” relationship, and 2 indicates
a “part_of” relationship. |
ID | Column vector listing Gene Ontology IDs that correspond to
the rows and columns of Matrix. |
Relationship | Cell array of character vectors defining the types of relationships. |
Download the current version of the Gene Ontology database from the Web into a geneont object in the MATLAB® software.
GO = geneont('LIVE',true) The MATLAB software creates a geneont object and displays the number of terms in the database.
Gene Ontology object with 27595 Terms.
Convert this geneont object into a relationship matrix.
[MATRIX, ID, REL] = getmatrix(GO);
goannotread | num2goid | term