\documentclass[12pt]{report}
\usepackage{epsfig}
\usepackage{amsmath}
\usepackage{graphicx}
\usepackage{latexsym}  % to get \Box in latex2e
\usepackage{makeidx}
\usepackage{smallverb}
\usepackage{verbatim}

\input{uwthesis}
\input{defs}
\addtocounter{secnumdepth}{1}

%
% Comment out if you do not want a copyright page
%
%\copyrighttrue

%
% Comment out if you do not want a list of figures
%
\figurespagetrue

%
% Comment out if you do not want a list of tables
%
\tablespagetrue

\begin{document}
\title{\theTitle}
\author{\theAuthor}
\degree{\theDegree}
\dept{\theDepartment}
\thesistype{\theDocType}
\beforepreface

%
% Comment out the following two lines if you do not want an abstract
%
\prefacesection{Abstract}
\input{abstract}

%
% Comment out the following two lines if you do not want acknowledgements
%
\prefacesection{Acknowledgements}
\input{acknowledgement}

%\prefacesection{Preface}
%\input{preface}

\afterpreface

%
% The chapters of the thesis
%

\include{chapter1}
\include{chapter2}
\include{chapter3}

\include{chapter4}
\include{chapter5}
\include{chapter6}
\include{chapter7}
%\include{chapter8}

%
% Bibliography in alpha style
% You can change the bibliography style to one of:
%   alpha, plain, acm, siam, chicago etc...
%
\bibliographystyle{plain}
\bibliography{mathprog}

\appendix
%
% The appendices of the thesis
%
%\include{appendix1}
%\include{appendix2}
%\include{appendix3}

\end{document}
